( 2018) Drosophila tsRNAs preferentially suppress general translation machinery via antisense pairing and participate in cellular starvation response. Nucleic Acids Res: DOI: 10.1093/nar/gky189
( 2018) RNA: DOI: 10.1261/rna.062752.117
( 2017) Linkage of A-to-I RNA editing in metazoans and the impact on genome evolution. Molecular Biology and Evolution: DOI: 10.1093/molbev/msx274
( 2017) Adaptation of A-to-I RNA editing in Drosophila. Plos Genetics: DOI: 10.1371/journal.pgen.1006648
( 2017) Silencing of Transposable Elements by piRNAs in Drosophila: An Evolutionary Perspective. Genomics, Proteomics & Bioinformatics: Jun; 15(3):164-176
( 2016) microRNAs in the Same Clusters Evolve to Coordinately Regulate Functionally Related Genes. Molecular Biology and Evolution: 2016 Sep; 33(9):2232-47.
( 2015) Population genomics analyses of 962 whole genomes of humans reveal natural selection in non-coding regions. Plos One: DOI: 10.1371/journal.pone.0121644
( 2015) Suppression of endogenous gene silencing by degradation of normal cytoplasmic RNA in Arabidopsis. Science: 348: 120-123
( 2014) Extensive Pathogenicity of Mitochondrial Heteroplasmy in Healthy Human Individuals. Proceedings of the National Academy of Sciences of the United States of America: 111: 10654-10659
( 2013) Human expression QTLs are enriched in signals of environmental adaptation. Genome Biology and Evolution: evt124
( 2012) Impact of microRNA regulation on variation in human gene expression. Genome Research 22: 1243-1254
( 2011) Population genetics in non-model organisms: II. Natural selection in marginal habitats revealed by deep sequencing on dual platforms. Molecular Biology and Evolution doi: 10.1093 ( Lu J is a co-corresponding author)
( 2010) Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila. Genome Research 20: 212-227
( 2010) Adverse interactions between micro-RNAs and target genes from different species. PNAS 107: 12935-12940
( 2008) The birth and death of microRNA genes in Drosophila. Nature Genetics 40: 351-355
( 2008) Adaptive evolution of newly emerged micro-RNA genes in Drosophila. Molecular Biology and Evolution 25: 929-938
( 2008) Complex genetic interactions underlying expression differences between Drosophila races: analysis of chromosome substitutions. PNAS 105: 6362-6367
( 2007) Evolution of genes and genomes on the Drosophila phylogeny. Nature 450: 203-218 ( Lu J is a coauthor of this paper)
( 2007) Adaptive Genic Evolution in the Drosophila Genomes. PNAS 104: 2271-2276
( 2006) Genomic variation in rice - Genesis of highly polymorphic linkage blocks during domestication. PLoS Genetics 2(11):e199 ( Tang T and Lu J equally contribute to the paper)
( 2006) The accumulation of deleterious mutations in rice genomes: a hypothesis on the cost of domestication. Trends in Genetics 22: 126-131 ( Lu J and Tang T equally contribute to the paper)
( 2005) Weak selection revealed by the whole-genome comparison of the X chromosome and autosomes of human and chimpanzee. PNAS 102: 4063-4067
( 2004) A universal evolutionary index for amino acid changes. Molecular Biology and Evolution 21: 1548-1556
( 2003) Comment on "Chromosomal speciation and molecular divergence-accelerated evolution in rearranged chromosomes". Science 302: 988