2015>

2014>

2013>

2012>

2011>

2010>

2009>

2008>

2007>

2006>

2005>

Earlier Research>

2015

  • 1. 
    Zhao HQ, Zhang P, Gao H, He X, Dou Y, Huang AY, Liu XM, Ye AY, Dong MQ, Wei L.Profiling the RNA editomes of wild-type C. elegans and ADAR mutants. Genome Res.2015 Jan;25(1):66-75. doi: 10.1101/gr.176107.114. Epub 2014 Nov 4 [FullText]
  • 2. 
    Zhao Y, Tang L, Li Z, Jin J, Luo J, Gao G. Identification and analysis of unitary loss of long-established protein-coding genes in Poaceae shows evidences for biased gene loss and putatively functional transcription of relics. BMC Evol Biology. 2015 15:66 [FullText]
  • 3. 
    Hu B, Jin J, Guo A, Zhang H, Luo J, Gao G. GSDS 2.0: an upgraded gene feature visualization server. Bioinformatics. (2015) 31 (8): 1296-1297 [FullText]
  • 4. 
    Jin J, He K, Tang X, Li Z, Lv L, Zhao Y, Luo J,Kong L, Gao G. An Arabidopsis transcriptional regulatory map reveals distinct functional and evolutionary features of novel transcription factors. Mol Biol Evol. 2015 Mar 6. pii: msv058. [FullText]

2014

  • 1. 
    Ding Y, Wang M, He Y, Ye AY, Yang X, Liu F, Meng Y, Gao G, Wei L. 2014. "Bioinformatics: introduction and methods", a bilingual Massive Open Online Course (MOOC) as a new example for global bioinformatics education. PLoS Comput Biol 10(12):e1003955 [FullText]
  • 2. 
    Huang AY, Xu X, Ye AY, Wu Q, Yan L, Zhao B, Yang X, He Y, Wang S, Zhang Z, Gu B, Zhao HQ et al. 2014. Postzygotic single-nucleotide mosaicisms in whole-genome sequences of clinically unremarkable individuals. Cell Res 24(11):1311-27 [FullText]
  • 3. 
    Gao G, Vibranovski MD, Zhang L, Li Z, Liu M, Zhang YE, Li X, Zhang W, Fan Q, VanKuren NW, Long M, Wei L. A long-term demasculinization of X-linked intergenic noncoding RNAs in Drosophila melanogaster. Genome Res. 2014 Apr;24(4):629-38.doi: 10.1101/gr.1658 [FullText]
  • 4. 
    Zhou WZ, Ye AY, Sun ZK, Tian HH, Pu TZ, Wu YY, Wang DD, Zhao MZ, Lu SJ, Yang CH, Wei L. Statistical analysis of twenty years (1993 to 2012) of data from mainland China`s first intervention center for children with autism spectrum disorder. Mol Autism. 201 [FullText]
  • 5. 
    Zhao HQ, Zhang P, Gao H, He X, Dou Y, Huang AY, Liu XM, Ye AY, Dong MQ, Wei L.Profiling the RNA editomes of wild-type C. elegans and ADAR mutants. Genome Res.2015 Jan;25(1):66-75. doi: 10.1101/gr.176107.114. Epub 2014 Nov 4 [FullText]
  • 6. 
    Dong S, Walker MF, Carriero NJ, DiCola M, Willsey AJ, Ye AY, Waqar Z, Gonzalez LE, Overton JD, Frahm S, Keaney JF 3rd, Teran NA, Dea J, Mandell JD, Hus Bal V,Sullivan CA, DiLullo NM, Khalil RO, Gockley J, Yuksel Z, Sertel SM,Ercan-Sencicek AG, Gupta AR, M [FullText]
  • 7. 
    Wang C, Tao L. Dimensional reduction of a V1 ring model with simple and complex cells. J Comput Neurosci. 2014 Dec;37(3):481-92. doi:10.1007/s10827-014-0516-6 [FullText]
  • 8. 
    Yang X, Gao H, Zhang J, Xu X, Liu X, Wu X, Wei L, Zhang Y. ATP1A3 mutations and genotype-phenotype correlation of alternating hemiplegia of childhood in Chinese patients. PLoS One. 2014 May 19;9(5):e97274. doi:10.1371/journal.pone.0097274. eCollection 201 [FullText]
  • 9. 
    Zhao M, Kong L, Qu H. A systems biology approach to identify intelligence quotient score-related genomic regions, and pathways relevant to potential therapeutic treatments. Sci Rep. 2014 Feb 25;4:4176. doi: 10.1038/srep04176 [FullText]
  • 10. 
    Ye AY, Liu QR, Li CY, Zhao M, Qu H. Human transporter database: comprehensive knowledge and discovery tools in the human transporter genes. PLoS One. 2014 Feb 18;9(2):e88883. doi: 10.1371/journal.pone.0088883. eCollection 2014. Erratum in: PLoS One. 2014; [FullText]

2013

  • 1. 
    Jin JP, Zhang H, Kong L, Gao G and Luo JC. PlantTFDB 3.0: a portal for the functional and evolutionary study of plant tran1111ion factors. Nucleic Acids Research 2013. [FullText]
  • 2. 
    Tang X, Hou M, Ding Y, Li ZH, Ren LC, Gao G. Systematically profiling and annotating long intergenic non-coding RNAs in human embryonic stem cell. BMC Genomics 2013, 14(Suppl 5):S3 [FullText]
  • 3. 
    Kong L, Cheng L, Fan LY, Zhao M, Qu H. IQdb: an intelligence quotient score-associated gene resource for human intelligence. Database (Oxford) 2013 [FullText]
  • 4. 
    Huang Y, Xie C, Adam YY, Li C-Y, Gao G, Wei L: Recent Adaptive Events in Human Brain Revealed by Meta-Analysis of Positively Selected Genes. PLoS One 2013, 8(4):e61280. [FullText]

2012

  • 1. 
    Xie C, Zhang YE, Chen J-Y, Liu C-J, Zhou W-Z, Li Y, Zhang M, Zhang R, Wei L, Li C-Y: Hominoid-specific de novo protein-coding genes originating from long non-coding RNAs. PLoS genetics 2012, 8(9):e1002942 [FullText]
  • 2. 
    Tao L, Praissman J, Sornborger AT: Improved dimensionally-reduced visual cortical network using stochastic noise modeling. Journal of computational neuroscience 2012, 32(2):367-376. [FullText]
  • 3. 
    Xu LM, Li JR, Huang Y, Zhao M, Tang X, Wei L. AutismKB: an evidence-based knowledgebase of autism genetics. Nucleic Acids Res. 2012 Jan;40(Database issue):D1016-22 [FullText]
  • 4. 
    Kong L, Wang J, Zhao S, Gu X, Luo J, Gao G. ABrowse--a customizable next-generation genome browser framework. BMC Bioinformatics. 2012 Jan 5;13:2 [FullText]
  • 5. 
    Wang J, Kong L, Gao G, Luo J. A brief introduction to web-based genome browsers. Briefings in Bioinformatics. 2012 Jul 3 [FullText]

2011

  • 1. 
    Tao L, Cai D. Computational modeling of the dynamics of simple and complex cells in primary visual cortex. Sheng Li Xue Bao. 2011 Oct 25;63(5):401-11. [FullText]
  • 2. 
    Li CY, Zhou WZ, Zhang PW, Johnson C, Wei L, Uhl GR. Meta-analysis and genome-wide interpretation of genetic susceptibility to drug addiction. BMC Genomics. 2011 Oct 15;12:508. [FullText]
  • 3. 
    Tao L, Praissman J, Sornborger AT. Improved dimensionally-reduced visual cortical network using stochastic noise modeling. J Comput Neurosci. 2011 Aug 27. (Epub ahead of print) [FullText]
  • 4. 
    Xie C, Mao X, Huang J, Ding Y, Wu J, Dong S, Kong L, Gao G, Li CY, Wei L. KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W316-22 [FullText]
  • 5. 
    Chen ZX, Zhang YE, Vibranovski M, Luo J, Gao G, Long M. Deficiency of X-linked inverted duplicates with male-biased expression and the underlying evolutionary mechanisms in the Drosophila genome. Mol Biol Evol. 2011 May 5 [FullText]
  • 6. 
    Wang J, Kong L, Zhao S, Zhang H, Tang L, Li Z, Gu X, Luo J, Gao G. Rice-Map: a new-generation rice genome browser. BMC Genomics. 2011 Mar 30;12:165. [FullText]
  • 7. 
    Tao L, Lauderdale JD, Sornborger AT. Mapping Functional Connectivity between Neuronal Ensembles with Larval Zebrafish Transgenic for a Ratiometric Calcium Indicator. Front Neural Circuits. 2011 Feb 22;5:2 [FullText]
  • 8. 
    Caceres MJ. Carrillo JA, Tao L. A numerical solver for a nonlinear Fokker Planck equation representation of neuronal network dynamics. Journal of Computational Physics. 2011 Feb; 230(4). [FullText]
  • 9. 
    Hines JK, Li X, Du Z, Higurashi T, Li L, Craig EA. [SWI], the prion formed by the chromatin remodeling factor Swi1, is highly sensitive to alterations in Hsp70 chaperone system activity. PLoS Genet. 2011 Feb;7(2):e1001309. [FullText]
  • 10. 
    Jiang Z, Liu X, Peng Z, Wan Y, Ji Y, He W, Wan W, Luo J, Guo H. AHD2.0: an update version of Arabidopsis Hormone Database for plant systematic studies. Nucleic Acids Res. 2011 Jan;39(Database issue):D1123-9 [FullText]
  • 11. 
    Liu X, Li Z, Jiang Z, Zhao Y, Peng J, Jin J, Guo H, Luo J. LSD: a leaf senescence database. Nucleic Acids Res. 2011 Jan;39(Database issue):D1103-7 [FullText]
  • 12. 
    Zhang H, Jin J, Tang L, Zhao Y, Gu X, Gao G, Luo J. PlantTFDB 2.0: update and improvement of the comprehensive plant tran1111ion factor database. Nucleic Acids Res. 2011 Jan;39(Database issue):D1114-7 [FullText]
  • 13. 
    Zhao M, Chen Y, Qu D, Qu H. TSdb: a database of transporter substrates linking metabolic pathways and transporter systems on a genome scale via their shared substrates. Sci China Life Sci. 2011 Jan;54(1):60-4 [FullText]

2010

  • 1. 
    Zhao M, Qu H. PathLocdb: a comprehensive database for the subcellular localization of metabolic pathways and its application to multiple localization analysis. BMC Genomics. 2010 Dec 2;11 Suppl 4:S13 [FullText]
  • 2. 
    Shen L, Gao G, Zhang Y, Zhang H, Ye Z, Huang S, Huang J, Kang J. A single amino acid substitution confers enhanced methylation activity of mammalian Dnmt3b on chromatin DNA. Nucleic Acids Res. 2010 Oct;38(18):6054-64 [FullText]
  • 3. 
    Ni M, Shu W, Bo X, Wang S, Li S. Correlation between sequence conservation and structural thermodynamics of microRNA precursors from human, mouse, and chicken genomes. BMC Evol Biol. 2010 Oct 27;10:329 [FullText]
  • 4. 
    He K, Guo AY, Gao G, Zhu QH, Liu XC, Zhang H, Chen X, Gu X, Luo J. Computational identification of plant tran1111ion factors and the construction of the PlantTFDB database. Methods Mol Biol. 2010;674:351-68. [FullText]
  • 5. 
    Li CY, Zhang Y, Wang Z, Zhang Y, Cao C, Zhang PW, Lu SJ, Li XM, Yu Q, Zheng X, Du Q, Uhl GR, Liu QR, Wei L. A human-specific de novo protein-coding gene associated with human brain functions. PLoS Comput Biol. 2010 Mar 26;6(3):e1000734. [FullText]
  • 6. 
    Tao L, Sornborger AT. Dimensionally-reduced visual cortical network model predicts network response and connects system- and cellular-level de1111ions. J Comput Neurosci. 2010 Feb;28(1):91-106. Epub 2009 Oct 6 [FullText]

2009

  • 1. 
    Zhao M, Qu H. Human liver rate-limiting enzymes influence metabolic flux via branch points and inhibitors. BMC Genomics. 2009 Dec 3;10 Suppl 3:S31 [FullText]
  • 2. 
    Zhu Z, Zhang Y, Long M. Extensive structural renovation of retrogenes in the evolution of the Populus genome. Plant Physiol. 2009 Dec;151(4):1943-51 [FullText]
  • 3. 
    Li Z, Zhang H, Ge S, Gu X, Gao G, Luo J. Expression pattern divergence of duplicated genes in rice. BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S8 [FullText]
  • 4. 
    He K, Li X, Zhou J, Deng XW, Zhao H, Luo J. NTAP: for NimbleGen tiling array ChIP-chip data analysis. Bioinformatics. 2009 Jul 15;25(14):1838-40 [FullText]
  • 5. 
    Zhang Y, Lu S, Zhao S, Zheng X, Long M, Wei L. Positive selection for the male functionality of a co-retroposed gene in the hominoids, BMC Evolutionary Biology. 2009. 9, 252 [FullText]
  • 6. 
    Zhao SQ, Gao G, Wei L., BOAT: Basic Basic Oligonucleotide Alignment Tool, BMC Genomics 2009. 10 (Supl. 3), S2 [FullText]
  • 7. 
    Zhao M, Chen X, Gao G, Tao L, Wei L., RLEdb: a database of rate-limiting enzymes and their regulation in human, rat, mouse, yeast and E. coli., Cell Res. 2009 Jun;19(6):793-5. [FullText]
  • 8. 
    Liu X, Wu J, Wang J, Liu X, Zhao S, Li Z, Kong L, Gu X, Luo J, Gao G., WebLab: a data-centric, knowledge-sharing bioinformatic platform., Nucleic Acids Research, doi:10.1093/nar/gkp428 [FullText]
  • 9. 
    Zhi-Yu Peng, Huiyong Zhang, Tingting Liu, Katherine M Dzikiewicz, Songgang Li, Xiangfeng Wang, Guocheng Hu, Zhengge Zhu, Xinhua Wei, Qi-Hui Zhu, Zongxiu Sun, Song Ge, Ligeng Ma, Lei Li, xingwang deng, Characterization of the genome expression trends in th
  • 10. 
    Ge Gao, Jiong-Tang Li, Lei Kong, Louis Tao and Liping Wei, Human herpesvirus miRNAs statistically preferentially target host genes involved in cell signaling and adhesion/junction pathways, Cell Research (2009) 19:665-667. doi: 10.1038/cr.2009.45 [FullText]
  • 11. 
    Zheng Li, Min Liu, Li Zhang, Wenxia Zhang, Ge Gao, Zuoyan Zhu, Liping Wei, Qichang Fan, and Manyuan Long, Detection of intergenic non-coding RNAs expressed in the main developmental stages in Drosophila melanogaster., Nucleic Acids Research, May 18, 2009; [FullText]
  • 12. 
    Li CY, Liu QR, Zhang PW, Li XM, Wei L, Uhl GR., OKCAM: an ontology-based, human-centered knowledgebase for cell adhesion molecules., Nucleic Acids Res. 2009 Jan;37(Database issue):D251-60. Epub 2008 Sep 12 [FullText]

2008

  • 1. 
    Zhi-Yu Peng, Xin Zhou, Linchuan Li, Xiangchun Yu, Hongjiang Li, Zhiqiang Jiang, Guangyu Cao, Mingyi Bai, Xingchun Wang, Caifu Jiang, Haibin Lu, Lijia Qu, Zhiyong Wang, Jianru Zuo, Xiangdong Fu, Jianmin Zhou,Zhen Su, Songgang Li, and Hongwei Guo, Arabidops
  • 2. 
    Zhong YF, Butts T, Holland PW., HomeoDB: a database of homeobox gene diversity., Evol Dev. 2008 Sep-Oct;10(5):516-8. [FullText]
  • 3. 
    Jiong-Tang Li, Yong Zhang, Lei Kong, Qing-Rong Liu and Liping Wei, Trans-natural antisense tran1111s including noncoding RNAs in 10 species: implications for expression regulation. Nucleic Acids Research, July 24, 2008, doi:10.1093/nar/gkn470 [FullText]
  • 4. 
    Wei L, Yu J., Bioinformatics in china: a personal perspective., Plos Computational Biology, 2008 Apr 25;4(4):e1000020 [FullText]
  • 5. 
    Li CY, Mao X, Wei L. Genes and (Common) Pathways Underlying Drug Addiction. Plos Computational Biology, 2008, 4(1): e2. doi:10.1371/journal.pcbi.0040002 [FullText]

2007

  • 1. 
    Guo AY, Chen X, Gao G, Zhang H, Zhu QH, Liu XC, Zhong YF, Gu X, He K, Luo J. PlantTFDB: a comprehensive plant tran1111ion factor database. Nucleic Acids Research, 2007 Oct 12, doi:10.1093/nar/gkm841
  • 2. 
    Kong, L., Y. Zhang, Z.Q. Ye, X.Q. Liu, S.Q. Zhao, L. Wei, and G. Gao. 2007. CPC: assess the protein-coding potential of tran1111s using sequence features and support vector machine. Nucleic Acids Res 36: W345-349 [Abstract] [FullText]
  • 3. 
    Li, C.Y., et al., A nonsynonymous SNP in human cytosolic sialidase in a small Asian population results in reduced enzyme activity: potential link with severe adverse reactions to oseltamivir. Cell Research (2007) 17: 357–362. doi: 10.1038/cr.2007.27; [Abstract]
  • 4. 
    Sun, Y., et al., ABCGrid: Application for Bioinformatics Computing Grid. Bioinformatics.2007; 23: 1175-1177 [Abstract]
  • 5. 
    Ye, Z.Q., et al., Finding New Structural and Sequence Attributes to Predict Possible Disease-Association of Single Amino Acid Polymorphism (SAP). Bioinformatics 2007 23(12):1444-1450; doi:10.1093/bioinformatics/btm119 [Abstract] [FullText]
  • 6. 
    Zhang Y, Li J, Kong L, Gao G, Liu QR, Wei L, NATsDB: Natural Antisense Tran1111s DataBase. Nucleic Acids Res. 2007 Jan;35(Database issue):D156-61 [Abstract] [FullText]
  • 7. 
    Zhang, W., et al., SynDB: a Synapse protein DataBase based on synapse ontology. Nucleic Acids Res, 2007. 35(Database issue): p. D737-41 [Abstract] [FullText]
  • 8. 
    Zhu, Q.H., et al., DPTF: a database of poplar tran1111ion factors. Bioinformatics, 2007 [FullText]

2006

  • 1. 
    Zhou M, Xu H, Wei X, Ye Z, Wei L, Gong W, Wang Y, Zhu Z: Identification of a glyphosate-resistant mutant of rice 5-enolpyruvylshikimate 3-phosphate synthase using a directed evolution strategy. Plant Physiol 2006, 140(1):184-195 [Abstract] [FullText]
  • 2. 
    Zhang Y, Liu XS, Liu QR, Wei L: Genome-wide in silico identification and analysis of cis natural antisense tran1111s (cis-NATs) in ten species. Nucleic Acids Res 2006, 34(12):3465-3475 [Abstract] [FullText]
  • 3. 
    Cai Z, Mao X, Li S, Wei L: Genome comparison using Gene Ontology (GO) with statistical testing. BMC Bioinformatics 2006, 7:374 [Abstract] [FullText]
  • 4. 
    Cheng HP, Wei S, Wei LP, Verkhratsky A: Calcium signaling in physiology and pathophysiology. Acta Pharmacol Sin 2006, 27(7):767-772. [Abstract] [FullText]
  • 5. 
    Gao G, Zhong Y, Guo A, Zhu Q, Tang W, Zheng W, Gu X, Wei L, Luo J: DRTF: a database of rice tran1111ion factors. Bioinformatics 2006, 22(10):1286-1287 [Abstract] [FullText]
  • 6. 
    Ji X, Li W, Song J, Wei L, Liu XS: CEAS: cis-regulatory element annotation system. Nucleic Acids Res 2006, 34(Web Server issue):W551-554 [Abstract] [FullText]
  • 7. 
    Li J, Li X, Guo L, Lu F, Feng X, He K, Wei L, Chen Z, Qu LJ, Gu H: A subgroup of MYB tran1111ion factor genes undergoes highly conserved alternative splicing in Arabidopsis and rice. J Exp Bot 2006, 57(6):1263-1273. [Abstract] [FullText]
  • 8. 
    Li L, Wang X, Stolc V, Li X, Zhang D, Su N, Tongprasit W, Li S, Cheng Z, Wang J et al: Genome-wide tran1111ion analyses in rice using tiling microarrays. Nat Genet 2006, 38(1):124-129. [Abstract]
  • 9. 
    Lu XC, Gong HQ, Huang ML, Bai SL, He YB, Mao X, Geng Z, Li SG, Wei L, Yuwen JS et al: Molecular analysis of early rice stamen development using organ-specific gene expression profiling. Plant Mol Biol 2006, 61(6):845-861 [Abstract]
  • 10. 
    Shi X, Wang X, Li Z, Zhu Q, Tang W, Ge S, Luo J: Nucleotide substitution pattern in rice paralogues: implication for negative correlation between the synonymous substitution rate and codon usage bias. Gene 2006, 376(2):199-206 [Abstract]
  • 11. 
    Shi YH, Zhu SW, Mao XZ, Feng JX, Qin YM, Zhang L, Cheng J, Wei LP, Wang ZY, Zhu YX: Tran1111ome profiling, molecular biological, and physiological studies reveal a major role for ethylene in cotton fi [Abstract] [FullText]
  • 12. 
    Wu J, Mao X, Cai T, Luo J, Wei L: KOBAS server: a web-based platform for automated annotation and pathway identification. Nucleic Acids Res 2006, 34(Web Server issue):W720-724. [Abstract] [FullText]

2005

  • 1. 
    Chen Y, Zhang Y, Yin Y, Gao G, Li S, Jiang Y, Gu X, Luo J: SPD--a web-based secreted protein database. Nucleic Acids Res 2005, 33(Database issue):D169-173. [Abstract] [FullText]
  • 2. 
    Dai X, Chen Q, Lian M, Zhou Y, Zhou M, Lu S, Chen Y, Luo J, Gu X, Jiang Y et al: Systematic high-yield production of human secreted proteins in Escherichia coli. Biochem Biophys Res Commun 2005, 332(2):593-601. [Abstract]
  • 3. 
    Feng JX, Liu D, Pan Y, Gong W, Ma LG, Luo JC, Deng XW, Zhu YX: An annotation update via cDNA sequence analysis and comprehensive profiling of developmental, hormonal or environmental responsiveness of the Arabidopsis AP2/EREBP tran1111ion factor gene fami [Abstract]
  • 4. 
    Guo A, He K, Liu D, Bai S, Gu X, Wei L, Luo J: DATF: a database of Arabidopsis tran1111ion factors. Bioinformatics 2005, 21(10):2568-2569. [Abstract]
  • 5. 
    Han Y, Ni P, Lu H, Ye J, Hu J, Chen C, Huang X, Cong L, Li G, Wang J et al: Applications of the double-barreled data in whole-genome shotgun sequence assembly and analysis. Sci China C Life Sci 2005, 48(3):300-306. [Abstract]
  • 6. 
    Li L, Wang X, Xia M, Stolc V, Su N, Peng Z, Li S, Wang J, Deng XW: Tiling microarray analysis of rice chromosome 10 to identify the tran1111ome and relate its expression to chromosomal architecture. Genome Biol 2005, 6(6):R52 [Abstract] [FullText]
  • 7. 
    Li R, Ye J, Li S, Wang J, Han Y, Ye C, Yang H, Yu J, Wong GK: ReAS: Recovery of Ancestral Sequences for Transposable Elements from the Unassembled Reads of a Whole Genome Shotgun. PLoS Comput Biol 2005, 1(4):e43. [Abstract] [FullText]
  • 8. 
    Mao X, Cai T, Olyarchuk JG, Wei L: Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary. Bioinformatics 2005, 21(19):3787-3793 [Abstract] [FullText]
  • 9. 
    Wang J, Xia Q, He X, Dai M, Ruan J, Chen J, Yu G, Yuan H, Hu Y, Li R et al: SilkDB: a knowledgebase for silkworm biology and genomics. Nucleic Acids Res 2005, 33(Database issue):D399-402 [Abstract] [FullText]
  • 10. 
    Wang X, Shi X, Hao B, Ge S, Luo J: Duplication and DNA segmental loss in the rice genome: implications for diploidization. New Phytol 2005, 165(3):937-946. [Abstract]
  • 11. 
    Wu X, Walker MG, Luo J, Wei L: GBA server: EST-based digital gene expression profiling. Nucleic Acids Res 2005, 33(Web Server issue):W673-676. [Abstract] [FullText]
  • 12. 
    Yin YB, Zhang Y, Yu P, Luo JC, Jiang Y, Li SG: Comparative study of apoptosis-related gene loci in human, mouse and rat genomes. Acta Biochim Biophys Sin (Shanghai) 2005, 37(5):341-348 [Abstract]
  • 13. 
    Yu J, Wang J, Lin W, Li S, Li H, Zhou J, Ni P, Dong W, Hu S, Zeng C et al: The Genomes of Oryza sativa: a history of duplications. PLoS Biol 2005, 3(2):e38. [Abstract] [FullText]
  • 14. 
    Zhong Y, Guo A, Li C, Zhuang B, Lai M, Wei C, Luo J, Li Y: Identification of a naturally occurring recombinant isolate of Sugarcane mosaic virus causing maize dwarf mosaic disease. Virus Genes 2005, 30(1):75-83 [Abstract]

Earlier Research

  • 1. 
    Liu Y, Wei L, Batzoglou S, Brutlag DL, Liu JS, Liu XS: A suite of web-based programs to search for tran1111ional regulatory motifs. Nucleic Acids Res 2004, 32(Web Server issue):W204-207 [Abstract] [FullText]
  • 2. 
    Wong GK, Liu B, Wang J, Zhang Y, Yang X, Zhang Z, Meng Q, Zhou J, Li D, Zhang J et al: A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. Nature 2004, 432(7018):717-722. [Abstract] [FullText]
  • 3. 
    Ying X, Luo H, Luo J, Li W: RDfolder: a web server for prediction of RNA secondary structure. Nucleic Acids Res 2004, 32(Web Server issue):W150-153. [Abstract] [FullText]
  • 4. 
    Bi S, Qin E, Xu Z, Li W, Wang J, Hu Y, Liu Y, Duan S, Hu J, Han Y et al: Complete genome sequences of the SARS-CoV: the BJ Group (Isolates BJ01-BJ04). Genomics Proteomics Bioinformatics 2003, 1(3):180-192 [Abstract]
  • 5. 
    Chen Y, Yu P, Luo J, Jiang Y: Secreted protein prediction system combining CJ-SPHMM, TMHMM, and PSORT. Mamm Genome 2003, 14(12):859-865 [Abstract]
  • 6. 
    Hu J, Wang J, Xu J, Li W, Han Y, Li Y, Ji J, Ye J, Xu Z, Zhang Z et al: Evolution and variation of the SARS-CoV genome. Genomics Proteomics Bioinformatics 2003, 1(3):216-225 [Abstract]
  • 7. 
    Ji SJ, Lu YC, Feng JX, Wei G, Li J, Shi YH, Fu Q, Liu D, Luo JC, Zhu YX: Isolation and analyses of genes preferentially expressed during early cotton fiber development by subtractive PCR and cDNA array. Nucleic Acids Res 2003, 31(10):2534-2543 [Abstract] [FullText]
  • 8. 
    Jiang Y, Gao G, Fang G, Gustafson EL, Laverty M, Yin Y, Zhang Y, Luo J, Greene JR, Bayne ML et al: PepPat, a pattern-based oligopeptide homology search method and the identification of a novel tachykinin-like peptide. Mamm Genome 2003, 14(5):341-349 [Abstract]
  • 9. 
    Su H, Qu LJ, He K, Zhang Z, Wang J, Chen Z, Gu H: The Great Wall of China: a physical barrier to gene flow? Heredity 2003, 90(3):212-219 [Abstract] [FullText]
  • 10. 
    Xu J, Hu J, Wang J, Han Y, Hu Y, Wen J, Li Y, Ji J, Ye J, Zhang Z et al: Genome organization of the SARS-CoV. Genomics Proteomics Bioinformatics 2003, 1(3):226-235. [Abstract]
  • 11. 
    Zhang Y, Yin Y, Chen Y, Gao G, Yu P, Luo J, Jiang Y: PCAS--a precomputed proteome annotation database resource. BMC Genomics 2003, 4(1):42. [Abstract] [FullText]
  • 12. 
    Zhong L, Zhang K, Huang X, Ni P, Han Y, Wang K, Wang J, Li S: A statistical approach designed for finding mathematically defined repeats in shotgun data and determining the length distribution of clone-inserts. Genomics Proteomics Bioinformatics 2003, 1(1 [Abstract]
  • 13. 
    Ding HT, Ren H, Chen Q, Fang G, Li LF, Li R, Wang Z, Jia XY, Liang YH, Hu MH et al: Parallel cloning, expression, purification and crystallization of human proteins for structural genomics. Acta Crystallogr D Biol Crystallogr 2002, 58(Pt 12):2102-2108. [Abstract]
  • 14. 
    Wang J, Wong GK, Ni P, Han Y, Huang X, Zhang J, Ye C, Zhang Y, Hu J, Zhang K et al: RePS: a sequence assembler that masks exact repeats identified from the shotgun data. Genome Res 2002, 12(5):824-831 [Abstract] [FullText]
  • 15. 
    Yu Z, Li T, Zhao J, Luo J: PGAAS: a prokaryotic genome assembly assistant system. Bioinformatics 2002, 18(5):661-665. [Abstract] [FullText]
  • 16. 
    Carugo O, Lu S, Luo J, Gu X, Liang S, Strobl S, Pongor S: Structural analysis of free and enzyme-bound amaranth alpha-amylase inhibitor: classification within the knottin fold superfamily and analysis of its functional flexibility. Protein Eng 2001, 14(9) [Abstract] [FullText]
  • 17. 
    Zhang G, Zhang S, Chen W, Qiu W, Wu H, Wang J, Luo J, Gu X, Cotton RG: Go!Poly: A gene-oriented polymorphism database. Hum Mutat 2001, 18(5):382-387 [Abstract] [FullText]
  • 18. 
    Liu Y, Luo J, Xu C, Ren F, Peng C, Wu G, Zhao J: Purification, characterization, and molecular cloning of the gene of a seed-specific antimicrobial protein from pokeweed. Plant Physiol 2000, 122(4):1015-1024. [Abstract] [FullText]
  • 19. 
    Li JM, Han JS, Huang Y, Tain PK, Qu SM, Yao M, Jiang HQ, Wan DF, Luo JC, Gu CX et al: A novel gene delivery system targeting cells expressing VEGF receptors. Cell Res 1999, 9(1):11-25. [Abstract] [FullText]
  • 20. 
    Lu S, Deng P, Liu X, Luo J, Han R, Gu X, Liang S, Wang X, Li F, Lozanov V et al: Solution structure of the major alpha-amylase inhibitor of the crop plant amaranth. J Biol Chem 1999, 274(29):20473-20478. [Abstract] [FullText]
  • 21. 
    Zhu Y, Zhang Y, Luo J, Davies PJ, Ho DT: PPF-1, a post-floral-specific gene expressed in short-day-grown G2 pea, may be important for its never-senescing phenotype. Gene 1998, 208(1):1-6. [Abstract]